SpletDescription This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. Splet10. nov. 2024 · biocLite("ShortRead") ... R包:基本包(自动加载)和推荐包(安装R时也会下载,但需要手动加载),拓展包(其他包,手动加载). 安装好的包将被放在一个指定的目录下.这个目录被称为库(Library).当需要使用到某一个包的时候, ...
r语言shortread - 搜索
SpletThis package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality … Numerical and graphical summaries of RNA-Seq read data. Within-lane … DOI: 10.18129/B9.bioc.GenomeInfoDb Utilities for manipulating chromosome … A set of tools and methods for making and manipulating transcript centric … DOI: 10.18129/B9.bioc.Rsamtools Binary alignment (BAM), FASTA, variant call … The dada2 package infers exact amplicon sequence variants (ASVs) from high … ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome … DOI: 10.18129/B9.bioc.Biobase Biobase: Base functions for Bioconductor. … Provides efficient low-level and highly reusable S4 classes for storing, … Splet16. avg. 2012 · 我正在使用Bioconductor，我想安装ShortRead软件包。我已经尝试了很多次，但是在安装依赖包RCurl时出现错误。我得到这个错误在RStudio：在R中安装ShortRead软件包的问题 - 无法安装RCurl依赖项. Cannot find curl-config 我该怎么办？是否有替代ShortRead？ 感谢;） haynes international glassdoor
安装ShortRead时找不到zlib
Splet本虚包由这些包填实： r-base-core; dep: r-base-core (>= 4.0.3-1) GNU R core of statistical computation and graphics system rec: r-cran-runit GNU R package providing unit testing framework sug: r-bioc-affy BioConductor methods for Affymetrix Oligonucleotide Arrays sug: r-bioc-annotate Splet07. jul. 2024 · 作者: 回复/查看: 最后发表: shortread 包，主要用来读取fastq文件（原始数据） 学习最快乐 2024-7-7: 07452: 学习最快乐 2024-7-7 10:59: BatchQC——生成批次效应对数据影响的报告及是否需要校正 SpletProvides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read … haynes international fcu